Version: 2.0.5
Date: 2020-12-01
Category: DOCUMENTATION
Text: Added references to Hallett et al. (2016) and Avolio et al.
        (2019) to DESCRIPTION and README

Version: 2.0.5
Date: 2020-12-01
Category: BUG FIXES
Text: Resolved silent error (no longer silent in R 4.1) from failure to
        use output of `match.arg` (#122).

Version: 2.0.4
Date: 2020-05-06
Category: BUG FIXES
Text: Adapt to R 4.0 breaking change for string to factor conversion
        (PR # 118)

Version: 2.0.3
Date: 2019-09-17
Category: BUG FIXES
Text: Allow multivariate_ and abundance_difference to use
        `reference.treatment` with pooling.

Version: 2.0.3
Date: 2019-09-17
Category: BUG FIXES
Text: Eliminate superfluous treatment.var argument.

Version: 2.0.3
Date: 2019-09-17
Category: BUG FIXES
Text: Return NA for inconclusive multivariate_change and _difference
        results (see also vegandevs/vegan#306).

Version: 2.0.2
Date: 2019-04-09
Category: BUG FIXES
Text: use codyn::Evar rather than codyn::EQ in RAC_difference

Version: 2.0.2
Date: 2019-04-09
Category: BUG FIXES
Text: fixes for breaking change in testthat (PR #111)

Version: 2.0.1
Date: 2019-03-08
Category: DOCUMENTATION
Text: use `@inheritParams` to reduce redundancy

Version: 2.0.1
Date: 2019-03-08
Category: BUG FIXES
Text: elminate unverifiable centroid calculation in vegan::betadisper
        ([#306](https://github.com/vegandevs/vegan/issues/306))

Version: 2.0.1
Date: 2019-03-08
Category: BUG FIXES
Text: better error message (#108)

Version: 2.0.1
Date: 2019-03-08
Category: BUG FIXES
Text: fix handling of Null arguments (#95)

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: community_structure: Calculates richness and evenness (using
        specified metric) for a replicate

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: community_diversity: Calculates diversity (using specified
        metric) for a replicate

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: RAC_change: Calculates changes in species richness, evenness,
        species' ranks, gain, and losses for a replicate over time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: abundance_change: For each species in a replicate, calculates
        changes in abundance over time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: curve_change: Calculates changes in the shape of the RAC curve
        for each replicate over time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: multivariate_change: Calculates changes in community composition
        and dispersion over time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: RAC_difference: Calculates differences in species richness,
        evenness, species' ranks, shared species between paired samples
        at a single point in time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: abundance_difference: Calculates differences in abundance for
        each species in paired samples at a single point in time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: curve_difference: Calculates differences in the shape of the RAC
        between paired samples at a single point in time

Version: 2.0.0
Date: 2018-06-12
Category: NEW FUNCTIONS
Text: multivariate_difference: Calculates differences in community
        composition and dispersion of all replicates between treatments
        at a single point in time

Version: 2.0.0
Date: 2018-06-12
Category: BUG FIXES
Text:

Version: 2.0.0
Date: 2018-06-12
Category: Previous warnings have been changed to errors
Text:

Version: 1.1.0
Date: 2016-04-27
Category: NEW FEATURES
Text: Add S3 class for cyclic_shift *#66)

Version: 1.1.0
Date: 2016-04-27
Category: NEW FEATURES
Text: add an alias for `temporal_torus_translation` (#65)

Version: 1.1.0
Date: 2016-04-27
Category: BUG FIXES
Text: selectively import from stats and assertthat (#64)

Version: 1.1.0
Date: 2016-04-27
Category: BUG FIXES
Text: adjustments to coding consistency (#63)

Version: 1.1.0
Date: 2016-04-27
Category: BUG FIXES
Text: import 'stats' and 'permute' package methods (#69)

Version: 1.1.0
Date: 2016-04-27
Category: BUG FIXES
Text: Improved function and parameter names

Version: 1.0.1
Date: 2016-01-15
Category: BUG FIXES
Text: Fixed bug to ensure data frames are ordered before unlisting
        (#58)

Version: 1.0.1
Date: 2016-01-15
Category: BUG FIXES
Text: Fixed bug in temporal_torus_translation to correctly recognize
        numeric data (#59)

Version: 1.0.1
Date: 2016-01-15
Category: BUG FIXES
Text: Fixed bug in synchrony (Gross) with only 1 spp in a plot (#60)

Version: 1.0.1
Date: 2016-01-15
Category: BUG FIXES
Text: Fixed bug in calculating variance ratio if species counts are
        constant (#61)

Version: 1.0.0
Date: 2015-10-20
Category: NEW FEATURES
Text: Initial version (see help topic for 'codyn', e.g. "?codyn")

Version: 1.0.0
Date: 2015-10-20
Category: NEW FEATURES
Text: Includes functions for temporal community dynamics analysis

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: turnover: Calculates species turnover between time periods

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: mean_rank_shift: Calculates the mean relative change in species
        rank abundances

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: rate_change: Calculates the rate change in a community over time

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: rate_change_interval: Produces a data frame containing
        differences in species composition between samples at
        increasing time intervals

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: community_stability: Calculates community stability over time

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: variance_ratio: Computes the ratio of the variance of aggregate
        species abundances in a community

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: synchrony: Calculates the degree synchrony in species abundances

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: temporal_torus_translation: Calculates a null test statistic
        using a temporal modification of the torus translation

Version: 1.0.0
Date: 2015-10-20
Category: NEW FUNCTIONS
Text: temporal_torus_translation_CI: Returns confidence intervals
        calculated from a temporal modification of the torus
        translation